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taq extension mix  (New England Biolabs)


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    New England Biolabs taq extension mix
    Taq Extension Mix, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 96/100, based on 2609 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/taq+extension+mix/Taq+DNA+Polymerase+with+Standard+Taq+Buffer/us10287577-584-134-167
    Average 96 stars, based on 2609 article reviews
    taq extension mix - by Bioz Stars, 2026-09
    96/100 stars

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    Incubation:

    Article Title: Nucleic acid arrays of spatially discrete features on a surface
    Article Snippet: Prepared a standard paired end flowcell (Illumina, San Diego, Calif.) (preparation of Illumina flow cells is described below, and in full in co-pending applications WO2008/002502 and U.S. application Ser. .. No. 11/973,321 (corresponding to WO2008/041002), the contents of which are incorporated herein by reference in their entirety. b. Flushed through 120 μl of Hyb buffer at 60 μl/min, 20 C c. Increased temp to 96 C, pumped through a further 75 μl of Hyb buffer at 15 μl/min d. Cooled to 40 C e. Flushed through 75 μl of Wash buffer at 15 μl/min at 40 C f. Pumped a small air bubble into the lines (5 μl) g. Flushed in beads prepared in step 2 at 15 μl/min (10 μl beads per channel) h. Stopped pumping when the beads have filled the channels of the flowcell i. Incubated at 40 C for 10 mins j. Flushed out unbound beads with Wash buffer at 40 C, 15 μl/min for 75 μl k. Pumped in Taq extension mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) at 15 μl/min for 75 μl l. Heated to 74 C for 90 s to copy strands from beads onto surface oligos m. Cooled to 60 C n. Removed beads from flowcell by flushing in formamide at 60 C, 15 μl/min for 75 μl, then 0.1 N NaOH at 20 C, 60 μl/min for 75 μl The features on the surface can be further copied using the following optional steps: o. ..

    Article Title: Using populations of beads for the fabrication of arrays on surfaces
    Article Snippet: The beads from step 3 were then hybridized to templates from step 1 and the attached primers extended as follows: a. Gel-purified PCR products from step 1 above (eluted in buffer EB (QIAGEN)) were taken, Tween20 added to 0.1% and denatured by heating to 98 C for 5 mins and snap chilling on ice b. .. Added 20×SSC to give a final concentration of 5×SSC in the sample c. Incubated the denatured DNA at 45° C. and add 10 μl of grafted beads from step 3 d. Continued incubation at 45° C. for 15 mins e. Washed beads three times in 200 μl pre-warmed Wash buffer (0.3×SSC/0.1% Tween) at 45° C. f. Washed beads in 200 μl extension pre-mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8) g. Resuspended the beads in 100 μl Taq extension mix ((2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) h. Transferred to 0.2 ml tubes and heat to 74° C. for 180 s i. ..

    Article Title: Using populations of beads for the fabrication of arrays on surfaces
    Article Snippet: The beads from step 3 were then hybridized to templates from step 1 and the attached primers extended as follows: a. Gel-purified PCR products from step 1 above (eluted in buffer EB (QIAGEN)) were taken, Tween20 added to 0.1% and denatured by heating to 98 C for 5 mins and snap chilling on ice b. .. Added 20×SSC to give a final concentration of 5×SSC in the sample c. Incubated the denatured DNA at 45° C. and add 10 μl of grafted beads from step 3 d. Continued incubation at 45° C. for 15 mins e. Washed beads three times in 200 μl pre-warmed Wash buffer (0.3×SSC/0.1% Tween) at 45° C. f. Washed beads in 200 μl extension pre-mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8) g. Resuspended the beads in 100 μl Taq extension mix ((2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) h. Transferred to 0.2 ml tubes and heat to 74° C. for 180 s i. ..

    Article Title: Using populations of beads for the fabrication of arrays on surfaces
    Article Snippet: Prepared a standard paired end flowcell (Illumina, San Diego, Calif.) (preparation of Illumina flow cells is described below, and in full in co-pending applications WO2008/002502 and U.S. application Ser. .. No. 11/973,321 (corresponding to WO2008/041002), the contents of which are incorporated herein by reference in their entirety. b. Flushed through 120 μl of Hyb buffer at 60 μl/min, 20 C c. Increased temp to 96 C, pumped through a further 75 μl of Hyb buffer at 15 μl/min d. Cooled to 40 C e. Flushed through 75 μl of Wash buffer at 15 μl/min at 40 C f. Pumped a small air bubble into the lines (5 μl) g. Flushed in beads prepared in step 2 at 15 μl/min (10 μl beads per channel) h. Stopped pumping when the beads have filled the channels of the flowcell i. Incubated at 40 C for 10 mins j. Flushed out unbound beads with Wash buffer at 40 C, 15 μl/min for 75 μl k. Pumped in Taq extension mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) at 15 μl/min for 75 μl l. Heated to 74 C for 90 s to copy strands from beads onto surface oligos m. Cooled to 60 C n. Removed beads from flowcell by flushing in formamide at 60 C, 15 μl/min for 75 μl, then 0.1 N NaOH at 20 C, 60 μl/min for 75 μl The features on the surface can be further copied using the following optional steps: o. ..

    Article Title: Nucleic acid arrays of spatially discrete features on a surface
    Article Snippet: The beads from step 3 were then hybridized to templates from step 1 and the attached primers extended as follows: a. Gel-purified PCR products from step 1 above (eluted in buffer EB (QIAGEN)) were taken, Tween20 added to 0.1% and denatured by heating to 98 C for 5 mins and snap chilling on ice b. .. Added 20×SSC to give a final concentration of 5×SSC in the sample c. Incubated the denatured DNA at 45° C. and add 10 μl of grafted beads from step 3 d. Continued incubation at 45° C. for 15 mins e. Washed beads three times in 200 μl pre-warmed Wash buffer (0.3×SSC/0.1% Tween) at 45° C. f. Washed beads in 200 μl extension pre-mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8) g. Resuspended the beads in 100 μl Taq extension mix ((2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) h. Transferred to 0.2 ml tubes and heat to 74° C. for 180 s i. ..

    Article Title: Using populations of beads for the fabrication of arrays on surfaces
    Article Snippet: Prepared a standard paired end flowcell (Illumina, San Diego, Calif.) (preparation of Illumina flow cells is described below, and in full in co-pending applications WO2008/002502 and U.S. application Ser. .. No. 11/973,321 (corresponding to WO2008/041002), the contents of which are incorporated herein by reference in their entirety. b. Flushed through 120 μl of Hyb buffer at 60 μl/min, 20 C c. Increased temp to 96 C, pumped through a further 75 μl of Hyb buffer at 15 μl/min d. Cooled to 40 C e. Flushed through 75 μl of Wash buffer at 15 μl/min at 40 C f. Pumped a small air bubble into the lines (5 μl) g. Flushed in beads prepared in step 2 at 15 μl/min (10 μl beads per channel) h. Stopped pumping when the beads have filled the channels of the flowcell i. Incubated at 40 C for 10 mins j. Flushed out unbound beads with Wash buffer at 40 C, 15 μl/min for 75 μl k. Pumped in Taq extension mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) at 15 μl/min for 75 μl l. Heated to 74 C for 90 s to copy strands from beads onto surface oligos m. Cooled to 60 C n. Removed beads from flowcell by flushing in formamide at 60 C, 15 μl/min for 75 μl, then 0.1 N NaOH at 20 C, 60 μl/min for 75 μl The features on the surface can be further copied using the following optional steps: o. ..

    Article Title: Nucleic acid arrays of spatially discrete features on a surface
    Article Snippet: The beads from step 3 were then hybridized to templates from step 1 and the attached primers extended as follows: a. Gel-purified PCR products from step 1 above (eluted in buffer EB (QIAGEN)) were taken, Tween20 added to 0.1% and denatured by heating to 98 C for 5 mins and snap chilling on ice b. .. Added 20×SSC to give a final concentration of 5×SSC in the sample c. Incubated the denatured DNA at 45° C. and add 10 μl of grafted beads from step 3 d. Continued incubation at 45° C. for 15 mins e. Washed beads three times in 200 μl pre-warmed Wash buffer (0.3×SSC/0.1% Tween) at 45° C. f. Washed beads in 200 μl extension pre-mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8) g. Resuspended the beads in 100 μl Taq extension mix ((2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) h. Transferred to 0.2 ml tubes and heat to 74° C. for 180 s i. ..

    Article Title: Nucleic acid arrays of spatially discrete features on a surface
    Article Snippet: Prepared a standard paired end flowcell (Illumina, San Diego, Calif.) (preparation of Illumina flow cells is described below, and in full in co-pending applications WO2008/002502 and U.S. application Ser. .. No. 11/973,321 (corresponding to WO2008/041002), the contents of which are incorporated herein by reference in their entirety. b. Flushed through 120 μl of Hyb buffer at 60 μl/min, 20 C c. Increased temp to 96 C, pumped through a further 75 μl of Hyb buffer at 15 μl/min d. Cooled to 40 C e. Flushed through 75 μl of Wash buffer at 15 μl/min at 40 C f. Pumped a small air bubble into the lines (5 μl) g. Flushed in beads prepared in step 2 at 15 μl/min (10 μl beads per channel) h. Stopped pumping when the beads have filled the channels of the flowcell i. Incubated at 40 C for 10 mins j. Flushed out unbound beads with Wash buffer at 40 C, 15 μl/min for 75 μl k. Pumped in Taq extension mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) at 15 μl/min for 75 μl l. Heated to 74 C for 90 s to copy strands from beads onto surface oligos m. Cooled to 60 C n. Removed beads from flowcell by flushing in formamide at 60 C, 15 μl/min for 75 μl, then 0.1 N NaOH at 20 C, 60 μl/min for 75 μl The features on the surface can be further copied using the following optional steps: o. ..

    Concentration Assay:

    Article Title: Using populations of beads for the fabrication of arrays on surfaces
    Article Snippet: The beads from step 3 were then hybridized to templates from step 1 and the attached primers extended as follows: a. Gel-purified PCR products from step 1 above (eluted in buffer EB (QIAGEN)) were taken, Tween20 added to 0.1% and denatured by heating to 98 C for 5 mins and snap chilling on ice b. .. Added 20×SSC to give a final concentration of 5×SSC in the sample c. Incubated the denatured DNA at 45° C. and add 10 μl of grafted beads from step 3 d. Continued incubation at 45° C. for 15 mins e. Washed beads three times in 200 μl pre-warmed Wash buffer (0.3×SSC/0.1% Tween) at 45° C. f. Washed beads in 200 μl extension pre-mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8) g. Resuspended the beads in 100 μl Taq extension mix ((2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) h. Transferred to 0.2 ml tubes and heat to 74° C. for 180 s i. ..

    Article Title: Using populations of beads for the fabrication of arrays on surfaces
    Article Snippet: The beads from step 3 were then hybridized to templates from step 1 and the attached primers extended as follows: a. Gel-purified PCR products from step 1 above (eluted in buffer EB (QIAGEN)) were taken, Tween20 added to 0.1% and denatured by heating to 98 C for 5 mins and snap chilling on ice b. .. Added 20×SSC to give a final concentration of 5×SSC in the sample c. Incubated the denatured DNA at 45° C. and add 10 μl of grafted beads from step 3 d. Continued incubation at 45° C. for 15 mins e. Washed beads three times in 200 μl pre-warmed Wash buffer (0.3×SSC/0.1% Tween) at 45° C. f. Washed beads in 200 μl extension pre-mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8) g. Resuspended the beads in 100 μl Taq extension mix ((2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) h. Transferred to 0.2 ml tubes and heat to 74° C. for 180 s i. ..

    Article Title: Nucleic acid arrays of spatially discrete features on a surface
    Article Snippet: The beads from step 3 were then hybridized to templates from step 1 and the attached primers extended as follows: a. Gel-purified PCR products from step 1 above (eluted in buffer EB (QIAGEN)) were taken, Tween20 added to 0.1% and denatured by heating to 98 C for 5 mins and snap chilling on ice b. .. Added 20×SSC to give a final concentration of 5×SSC in the sample c. Incubated the denatured DNA at 45° C. and add 10 μl of grafted beads from step 3 d. Continued incubation at 45° C. for 15 mins e. Washed beads three times in 200 μl pre-warmed Wash buffer (0.3×SSC/0.1% Tween) at 45° C. f. Washed beads in 200 μl extension pre-mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8) g. Resuspended the beads in 100 μl Taq extension mix ((2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) h. Transferred to 0.2 ml tubes and heat to 74° C. for 180 s i. ..

    Article Title: Nucleic acid arrays of spatially discrete features on a surface
    Article Snippet: The beads from step 3 were then hybridized to templates from step 1 and the attached primers extended as follows: a. Gel-purified PCR products from step 1 above (eluted in buffer EB (QIAGEN)) were taken, Tween20 added to 0.1% and denatured by heating to 98 C for 5 mins and snap chilling on ice b. .. Added 20×SSC to give a final concentration of 5×SSC in the sample c. Incubated the denatured DNA at 45° C. and add 10 μl of grafted beads from step 3 d. Continued incubation at 45° C. for 15 mins e. Washed beads three times in 200 μl pre-warmed Wash buffer (0.3×SSC/0.1% Tween) at 45° C. f. Washed beads in 200 μl extension pre-mix (2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8) g. Resuspended the beads in 100 μl Taq extension mix ((2 M betaine, 20 mM Tris, 10 mM Ammonium Sulfate, 2 mM Magnesium sulfate, 0.1% Triton, 1.3% DMSO, pH 8.8 plus 200 μM dNTP's and 25 units/mL of Taq polymerase (NEB Product ref M0273L)) h. Transferred to 0.2 ml tubes and heat to 74° C. for 180 s i. ..



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